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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012568383.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25364.3 Da PI: 9.8012 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.4 | 1.9e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+i+n + rqvtfskRr gi+KKAeELSvLCdaev +iifs tgklyey XP_012568383.1 9 KKIDNATARQVTFSKRRRGIFKKAEELSVLCDAEVGLIIFSATGKLYEYG 58 68***********************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.053 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.36E-37 | 2 | 75 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-30 | 3 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.72 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.5E-13 | 95 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MARQKIKIKK IDNATARQVT FSKRRRGIFK KAEELSVLCD AEVGLIIFSA TGKLYEYGSS 60 KYVRMKDIIT RYNQHFQHMS KSNKPLQEFQ GENLSAELQK EVADKTQQLR GMKGEDFEGI 120 NLKGLQELEK TLETGLKRVM EMKEKRIVNE ISTLQIKGIK LEEQNKHLKQ KMAMLCNRKN 180 LILGDSDITM QEIVSSESMN NSGLSLEDDS SDTSLKLGLP YP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_S | 2e-17 | 1 | 88 | 1 | 86 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-17 | 1 | 88 | 1 | 86 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-17 | 1 | 88 | 1 | 86 | Myocyte-specific enhancer factor 2B |
1tqe_P | 2e-17 | 1 | 88 | 1 | 86 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012568382.1 | 1e-162 | PREDICTED: MADS-box protein AGL24-like isoform X1 | ||||
Refseq | XP_012568383.1 | 1e-162 | PREDICTED: MADS-box protein AGL24-like isoform X1 | ||||
Refseq | XP_012568384.1 | 1e-162 | PREDICTED: MADS-box protein AGL24-like isoform X1 | ||||
Swissprot | O82794 | 3e-69 | AGL24_ARATH; MADS-box protein AGL24 | ||||
Swissprot | Q9FVC1 | 3e-69 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | G7KBL2 | 1e-115 | G7KBL2_MEDTR; MADS-box transcription factor | ||||
STRING | VIT_18s0001g07460.t01 | 6e-77 | (Vitis vinifera) | ||||
STRING | GLYMA06G10020.2 | 6e-78 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 6e-63 | MIKC_MADS family protein |